GraftM数据库介绍

数据库名称:GraftM

数据库简述:

所属国家/地区:Australia

数据库主要信息:GraftM, a tool that uses gene specific packages to rapidly identify gene families in metagenomic data using hidden Markov models (HMMs) or DIAMOND databases, and classifies these sequences using placement into pre-constructed gene trees.Analysis of the NCBI nr database using the methyl-coenzyme M reductase McrA gpkg allowed the detection of novel sequences belonging to phylum-level lineages. A growing collection of gpkgs is available online , where curated packages can be uploaded and exchanged.

建立年份:2018

联系信息:Contact information

University/Institution:
University of Queensland

Address:
School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia 4072, Queensland, Australia

City:
Queensland

Province/State:

Country/Region:
Australia

Contact name (PI/Team):
Gene W Tyson

Contact email (PI/Helpdesk):
g.tyson@uq.edu.au

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