数据库名称:GraftM
数据库简述:
所属国家/地区:Australia
数据库主要信息:GraftM, a tool that uses gene specific packages to rapidly identify gene families in metagenomic data using hidden Markov models (HMMs) or DIAMOND databases, and classifies these sequences using placement into pre-constructed gene trees.Analysis of the NCBI nr database using the methyl-coenzyme M reductase McrA gpkg allowed the detection of novel sequences belonging to phylum-level lineages. A growing collection of gpkgs is available online , where curated packages can be uploaded and exchanged.
建立年份:2018
联系信息:Contact information
University/Institution:
University of Queensland
Address:
School of Chemistry and Molecular Biosciences, University of Queensland, St Lucia 4072, Queensland, Australia
City:
Queensland
Province/State:
Country/Region:
Australia
Contact name (PI/Team):
Gene W Tyson
Contact email (PI/Helpdesk):
g.tyson@uq.edu.au