数据库名称：CMD
数据库简述：The Cotton Microsatellite Database
所属国家/地区：United States
数据库主要信息：At present CMD contains publication, sequence, primer, mapping and homology data for nine major cotton microsatellite projects, collectively representing 5,484 microsatellites. In addition, CMD displays data for three of the microsatellite projects that have been screened against a panel of core germplasm. The standardized panel consists of 12 diverse genotypes including genetic standards, mapping parents, BAC donors, subgenome representatives, unique breeding lines, exotic introgression sources, and contemporary Upland cottons with significant acreage. A suite of online microsatellite data mining tools are accessible at CMD. These include an SSR server which identifies microsatellites, primers, open reading frames, and GC-content of uploaded sequences; BLAST and FASTA servers providing sequence similarity searches against the existing cotton SSR sequences and primers, a CAP3 server to assemble EST sequences into longer transcripts prior to mining for SSRs, and CMap, a viewer for comparing cotton SSR maps.
建立年份：2006
联系信息：Contact information
University/Institution:
Clemson University
Address:
Department of Genetics and Biochemistry, Clemson University, Biosystems Research Center, 51 New Cherry Street, Clemson, SC, 29634, USA
City:
Clemson
Province/State:
Country/Region:
United States
Contact name (PI/Team):
Anna Blenda
Contact email (PI/Helpdesk):
ude.nosmelc@adnelb
